Detailed information of SNP:
|
SNP ID:
sf0101000636(Gbrowse)
Chromosome: chr01 Position: 1000636 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 64.43% | 35.57% |
| All Indica | 798 | 94.99% | 5.01% |
| All Japonica | 497 | 19.92% | 80.08% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 210 | 83.33% | 16.67% |
| Temperate Japonica | 335 | 7.46% | 92.54% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0101000636 | C->T | LOC_Os01g02850(LOC_Os01g02850.1) | INTRON |