Detailed information of SNP:
|
SNP ID:
sf0101039689(Gbrowse)
Chromosome: chr01 Position: 1039689 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 90.40% | 9.60% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 496 | 75.40% | 24.60% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 70.96% | 29.04% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 13 | 38.46% | 61.54% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0101039689 | T->C | INTERGENIC | None |