Detailed information of SNP:
|
SNP ID:
sf0101040880(Gbrowse)
Chromosome: chr01 Position: 1040880 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 82.51% | 17.49% |
| All Indica | 798 | 77.57% | 22.43% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 212 | 36.32% | 63.68% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0101040880 | C->G | INTERGENIC | None |