Detailed information of SNP:
|
SNP ID:
sf0101044975(Gbrowse)
Chromosome: chr01 Position: 1044975 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 73.20% | 26.80% |
| All Indica | 796 | 77.64% | 22.36% |
| All Japonica | 496 | 74.19% | 25.81% |
| Aus | 66 | 31.82% | 68.18% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 210 | 36.19% | 63.81% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 334 | 70.66% | 29.34% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0101044975 | A->G | INTERGENIC | None |