Detailed information of SNP:
|
SNP ID:
sf0101086393(Gbrowse)
Chromosome: chr01 Position: 1086393 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 94.43% | 5.57% |
| All Indica | 799 | 94.49% | 5.51% |
| All Japonica | 497 | 94.16% | 5.84% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 94.03% | 5.97% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0101086393 | G->A | INTERGENIC | None |