Detailed information of SNP:
|
SNP ID:
sf0101172938(Gbrowse)
Chromosome: chr01 Position: 1172938 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 79.21% | 20.79% |
| All Indica | 799 | 77.10% | 22.90% |
| All Japonica | 497 | 94.97% | 5.03% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 31.46% | 68.54% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 335 | 95.52% | 4.48% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0101172938 | G->A | LOC_Os01g03070(LOC_Os01g03070.1) | INTRON |
| sf0101172938 | G->A | LOC_Os01g03070(LOC_Os01g03070.2) | INTRON |