Detailed information of SNP:
|
SNP ID:
sf0101183761(Gbrowse)
Chromosome: chr01 Position: 1183761 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 79.62% | 20.38% |
| All Indica | 798 | 77.82% | 22.18% |
| All Japonica | 497 | 94.97% | 5.03% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 32.39% | 67.61% |
| Indica Intermediate | 210 | 85.71% | 14.29% |
| Temperate Japonica | 335 | 95.52% | 4.48% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0101183761 | A->T | LOC_Os01g03090(LOC_Os01g03090.2) | INTRON |
| sf0101183761 | A->T | LOC_Os01g03090(LOC_Os01g03090.1) | INTRON |