Detailed information of SNP:
|
SNP ID:
sf0101206412(Gbrowse)
Chromosome: chr01 Position: 1206412 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 92.03% | 7.97% |
| All Indica | 798 | 97.12% | 2.88% |
| All Japonica | 497 | 97.38% | 2.62% |
| Aus | 66 | 9.09% | 90.91% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 212 | 93.87% | 6.13% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0101206412 | G->A | INTERGENIC | None |