Detailed information of SNP:
|
SNP ID:
sf0101235707(Gbrowse)
Chromosome: chr01 Position: 1235707 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 93.23% | 6.77% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 497 | 96.58% | 3.42% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 94.93% | 5.07% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0101235707 | G->A | LOC_Os01g03160(LOC_Os01g03160.1) | UTR_3_PRIME |
| sf0101235707 | G->A | LOC_Os01g03160(LOC_Os01g03160.2) | UTR_3_PRIME |