Detailed information of SNP:
|
SNP ID:
sf0101301139(Gbrowse)
Chromosome: chr01 Position: 1301139 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 79.79% | 20.21% |
| All Indica | 790 | 70.51% | 29.49% |
| All Japonica | 492 | 91.06% | 8.94% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 372 | 73.12% | 26.88% |
| Indica II | 210 | 87.62% | 12.38% |
| Indica Intermediate | 208 | 48.56% | 51.44% |
| Temperate Japonica | 330 | 86.97% | 13.03% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0101301139 | C->A | LOC_Os01g03220(LOC_Os01g03220.1) | INTRON |