Detailed information of SNP:
|
SNP ID:
sf0101328001(Gbrowse)
Chromosome: chr01 Position: 1328001 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 72.45% | 27.55% |
| All Indica | 799 | 67.58% | 32.42% |
| All Japonica | 497 | 89.94% | 10.06% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 375 | 70.40% | 29.60% |
| Indica II | 213 | 85.92% | 14.08% |
| Indica Intermediate | 211 | 44.08% | 55.92% |
| Temperate Japonica | 335 | 85.67% | 14.33% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0101328001 | A->G | LOC_Os01g03270(LOC_Os01g03270.1) | Synonymous |