Detailed information of SNP:
|
SNP ID:
sf0101338236(Gbrowse)
Chromosome: chr01 Position: 1338236 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 78.86% | 21.14% |
| All Indica | 799 | 67.83% | 32.17% |
| All Japonica | 497 | 92.76% | 7.24% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 70.13% | 29.87% |
| Indica II | 213 | 85.45% | 14.55% |
| Indica Intermediate | 211 | 45.97% | 54.03% |
| Temperate Japonica | 335 | 89.85% | 10.15% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0101338236 | T->C | INTERGENIC | None |