Detailed information of SNP:
|
SNP ID:
sf0101341348(Gbrowse)
Chromosome: chr01 Position: 1341348 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 79.28% | 20.72% |
| All Indica | 799 | 68.59% | 31.41% |
| All Japonica | 497 | 92.56% | 7.44% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 70.13% | 29.87% |
| Indica II | 213 | 87.32% | 12.68% |
| Indica Intermediate | 211 | 46.92% | 53.08% |
| Temperate Japonica | 335 | 89.55% | 10.45% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0101341348 | C->T | INTERGENIC | None |