Detailed information of SNP:
|
SNP ID:
sf0101351726(Gbrowse)
Chromosome: chr01 Position: 1351726 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1159 | 96.03% | 3.97% |
| All Indica | 669 | 99.25% | 0.75% |
| All Japonica | 370 | 88.92% | 11.08% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 312 | 100.00% | 0.00% |
| Indica II | 162 | 100.00% | 0.00% |
| Indica Intermediate | 195 | 97.44% | 2.56% |
| Temperate Japonica | 260 | 85.00% | 15.00% |
| Tropical Japonica | 67 | 100.00% | 0.00% |
| Japonica Intermediate | 43 | 95.35% | 4.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0101351726 | A->C | INTERGENIC | None |