Detailed information of SNP:
|
SNP ID:
sf0101353617(Gbrowse)
Chromosome: chr01 Position: 1353617 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1388 | 75.00% | 25.00% |
| All Indica | 771 | 69.78% | 30.22% |
| All Japonica | 494 | 93.32% | 6.68% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 358 | 73.18% | 26.82% |
| Indica II | 211 | 86.26% | 13.74% |
| Indica Intermediate | 202 | 46.53% | 53.47% |
| Temperate Japonica | 332 | 90.66% | 9.34% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0101353617 | C->G | LOC_Os01g03360(LOC_Os01g03360.1) | Non-Synonymous SNP |