Detailed information of SNP:
|
SNP ID:
sf0101398336(Gbrowse)
Chromosome: chr01 Position: 1398336 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 53.00% | 47.00% |
| All Indica | 797 | 23.21% | 76.79% |
| All Japonica | 497 | 92.76% | 7.24% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 4.53% | 95.47% |
| Indica II | 212 | 57.55% | 42.45% |
| Indica Intermediate | 210 | 21.90% | 78.10% |
| Temperate Japonica | 335 | 89.55% | 10.45% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0101398336 | G->A | INTERGENIC | None |