Detailed information of SNP:
|
SNP ID:
sf0101489991(Gbrowse)
Chromosome: chr01 Position: 1489991 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 89.88% | 10.12% |
| All Indica | 795 | 83.65% | 16.35% |
| All Japonica | 496 | 98.19% | 1.81% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 212 | 51.89% | 48.11% |
| Indica Intermediate | 208 | 87.98% | 12.02% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0101489991 | G->A | LOC_Os01g03630(LOC_Os01g03630.1) | INTRON |