Detailed information of SNP:
|
SNP ID:
sf0101546765(Gbrowse)
Chromosome: chr01 Position: 1546765 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 54.02% | 45.98% |
| All Indica | 798 | 84.46% | 15.54% |
| All Japonica | 497 | 7.85% | 92.15% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 374 | 79.14% | 20.86% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 80.57% | 19.43% |
| Temperate Japonica | 335 | 11.34% | 88.66% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0101546765 | C->T | INTERGENIC | None |