Detailed information of SNP:
|
SNP ID:
sf0101638685(Gbrowse)
Chromosome: chr01 Position: 1638685 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 93.86% | 6.14% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 494 | 82.79% | 17.21% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 334 | 92.22% | 7.78% |
| Tropical Japonica | 92 | 78.26% | 21.74% |
| Japonica Intermediate | 68 | 42.65% | 57.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0101638685 | G->T | INTERGENIC | None |