Detailed information of SNP:
|
SNP ID:
sf0101638997(Gbrowse)
Chromosome: chr01 Position: 1638997 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 58.67% | 41.33% |
| All Indica | 798 | 60.40% | 39.60% |
| All Japonica | 497 | 65.19% | 34.81% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 79.47% | 20.53% |
| Indica II | 212 | 19.81% | 80.19% |
| Indica Intermediate | 211 | 67.30% | 32.70% |
| Temperate Japonica | 335 | 88.96% | 11.04% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0101638997 | A->G | INTERGENIC | None |