Detailed information of SNP:
|
SNP ID:
sf0101821336(Gbrowse)
Chromosome: chr01 Position: 1821336 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 72.25% | 27.75% |
| All Indica | 786 | 59.03% | 40.97% |
| All Japonica | 497 | 90.34% | 9.66% |
| Aus | 65 | 90.77% | 9.23% |
| Indica I | 367 | 40.05% | 59.95% |
| Indica II | 211 | 77.25% | 22.75% |
| Indica Intermediate | 208 | 74.04% | 25.96% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 64.89% | 35.11% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0101821336 | C->A | LOC_Os01g04140(LOC_Os01g04140.1) | SNPs that introduce stop codons |