Detailed information of SNP:
|
SNP ID:
sf0101823220(Gbrowse)
Chromosome: chr01 Position: 1823220 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1406 | 68.35% | 31.65% |
| All Indica | 789 | 98.73% | 1.27% |
| All Japonica | 495 | 18.79% | 81.21% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 368 | 98.37% | 1.63% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 209 | 99.04% | 0.96% |
| Temperate Japonica | 335 | 14.33% | 85.67% |
| Tropical Japonica | 92 | 36.96% | 63.04% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0101823220 | C->T | INTERGENIC | None |