Detailed information of SNP:
|
SNP ID:
sf0101961916(Gbrowse)
Chromosome: chr01 Position: 1961916 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 75.67% | 24.33% |
| All Indica | 799 | 88.99% | 11.01% |
| All Japonica | 488 | 64.34% | 35.66% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 71.83% | 28.17% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 331 | 68.58% | 31.42% |
| Tropical Japonica | 93 | 62.37% | 37.63% |
| Japonica Intermediate | 64 | 45.31% | 54.69% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0101961916 | G->T | LOC_Os01g04409(LOC_Os01g04409.1) | INTRON |