Detailed information of SNP:
|
SNP ID:
sf0102021843(Gbrowse)
Chromosome: chr01 Position: 2021843 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1343 | 95.76% | 4.24% |
| All Indica | 797 | 100.00% | 0.00% |
| All Japonica | 423 | 86.76% | 13.24% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 279 | 89.96% | 10.04% |
| Tropical Japonica | 85 | 91.76% | 8.24% |
| Japonica Intermediate | 59 | 64.41% | 35.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0102021843 | C->A | LOC_Os01g04530(LOC_Os01g04530.1) | Synonymous |