Detailed information of SNP:
|
SNP ID:
sf0102082545(Gbrowse)
Chromosome: chr01 Position: 2082545 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 93.45% | 6.55% |
| All Indica | 799 | 97.50% | 2.50% |
| All Japonica | 497 | 87.12% | 12.88% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 93.73% | 6.27% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0102082545 | G->A | INTERGENIC | None |