Detailed information of SNP:
|
SNP ID:
sf0102102204(Gbrowse)
Chromosome: chr01 Position: 2102204 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 67.21% | 32.79% |
| All Indica | 799 | 63.08% | 36.92% |
| All Japonica | 496 | 69.15% | 30.85% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 34.40% | 65.60% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 79.62% | 20.38% |
| Temperate Japonica | 334 | 65.57% | 34.43% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0102102204 | C->A | INTERGENIC | None |