Detailed information of SNP:
|
SNP ID:
sf0102105039(Gbrowse)
Chromosome: chr01 Position: 2105039 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 59.62% | 40.38% |
| All Indica | 799 | 62.95% | 37.05% |
| All Japonica | 497 | 48.29% | 51.71% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 34.13% | 65.87% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 79.15% | 20.85% |
| Temperate Japonica | 335 | 42.69% | 57.31% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0102105039 | A->G | LOC_Os01g04680(LOC_Os01g04680.1) | INTRON |