Detailed information of SNP:
|
SNP ID:
sf0102106447(Gbrowse)
Chromosome: chr01 Position: 2106447 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 59.34% | 40.66% |
| All Indica | 799 | 62.58% | 37.42% |
| All Japonica | 497 | 48.29% | 51.71% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 33.87% | 66.13% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 78.67% | 21.33% |
| Temperate Japonica | 335 | 42.69% | 57.31% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0102106447 | A->G | LOC_Os01g04680(LOC_Os01g04680.1) | Non-Synonymous SNP |