Detailed information of SNP:
|
SNP ID:
sf0102109704(Gbrowse)
Chromosome: chr01 Position: 2109704 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 66.08% | 33.92% |
| All Indica | 798 | 85.46% | 14.54% |
| All Japonica | 497 | 45.88% | 54.12% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 212 | 67.45% | 32.55% |
| Indica Intermediate | 211 | 84.83% | 15.17% |
| Temperate Japonica | 335 | 57.01% | 42.99% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 48.53% | 51.47% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0102109704 | G->A | INTERGENIC | None |