Detailed information of SNP:
|
SNP ID:
sf0102114289(Gbrowse)
Chromosome: chr01 Position: 2114289 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 63.78% | 36.22% |
| All Indica | 799 | 65.21% | 34.79% |
| All Japonica | 497 | 62.58% | 37.42% |
| Aus | 67 | 43.28% | 56.72% |
| Indica I | 375 | 34.67% | 65.33% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 85.31% | 14.69% |
| Temperate Japonica | 335 | 54.33% | 45.67% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 54.41% | 45.59% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0102114289 | A->G | INTERGENIC | None |