Detailed information of SNP:
|
SNP ID:
sf0102115611(Gbrowse)
Chromosome: chr01 Position: 2115611 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 66.69% | 33.31% |
| All Indica | 798 | 86.47% | 13.53% |
| All Japonica | 495 | 46.06% | 53.94% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 374 | 96.79% | 3.21% |
| Indica II | 213 | 69.01% | 30.99% |
| Indica Intermediate | 211 | 85.78% | 14.22% |
| Temperate Japonica | 335 | 57.31% | 42.69% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 66 | 48.48% | 51.52% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 40 | 37.50% | 62.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0102115611 | T->C | INTERGENIC | None |