Detailed information of SNP:
|
SNP ID:
sf0102123242(Gbrowse)
Chromosome: chr01 Position: 2123242 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 84.30% | 15.70% |
| All Indica | 799 | 97.25% | 2.75% |
| All Japonica | 492 | 70.33% | 29.67% |
| Aus | 67 | 41.79% | 58.21% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 333 | 79.88% | 20.12% |
| Tropical Japonica | 91 | 27.47% | 72.53% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0102123242 | T->C | INTERGENIC | None |