Detailed information of SNP:
|
SNP ID:
sf0102140172(Gbrowse)
Chromosome: chr01 Position: 2140172 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 61.12% | 38.88% |
| All Indica | 797 | 40.78% | 59.22% |
| All Japonica | 497 | 91.95% | 8.05% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 374 | 67.38% | 32.62% |
| Indica II | 213 | 8.45% | 91.55% |
| Indica Intermediate | 210 | 26.19% | 73.81% |
| Temperate Japonica | 335 | 88.66% | 11.34% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0102140172 | T->C | LOC_Os01g04740(LOC_Os01g04740.1) | INTRON |