Detailed information of SNP:
|
SNP ID:
sf0102176568(Gbrowse)
Chromosome: chr01 Position: 2176568 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 88.40% | 11.60% |
| All Indica | 798 | 96.49% | 3.51% |
| All Japonica | 495 | 75.15% | 24.85% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 89.05% | 10.95% |
| Temperate Japonica | 335 | 95.82% | 4.18% |
| Tropical Japonica | 94 | 18.09% | 81.91% |
| Japonica Intermediate | 66 | 51.52% | 48.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0102176568 | G->A | INTERGENIC | None |