Detailed information of SNP:
|
SNP ID:
sf0102254943(Gbrowse)
Chromosome: chr01 Position: 2254943 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 96.34% | 3.66% |
| All Indica | 799 | 94.99% | 5.01% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0102254943 | G->A | INTERGENIC | None |