Detailed information of SNP:
|
SNP ID:
sf0102257475(Gbrowse)
Chromosome: chr01 Position: 2257475 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1361 | 57.90% | 42.10% |
| All Indica | 748 | 78.61% | 21.39% |
| All Japonica | 492 | 36.18% | 63.82% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 368 | 80.98% | 19.02% |
| Indica II | 180 | 75.56% | 24.44% |
| Indica Intermediate | 200 | 77.00% | 23.00% |
| Temperate Japonica | 334 | 17.66% | 82.34% |
| Tropical Japonica | 92 | 85.87% | 14.13% |
| Japonica Intermediate | 66 | 60.61% | 39.39% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 47.50% | 52.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0102257475 | C->T | INTERGENIC | None |