Detailed information of SNP:
|
SNP ID:
sf0102328091(Gbrowse)
Chromosome: chr01 Position: 2328091 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1178 | 98.39% | 1.61% |
| All Indica | 616 | 97.08% | 2.92% |
| All Japonica | 445 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 319 | 99.37% | 0.63% |
| Indica II | 135 | 90.37% | 9.63% |
| Indica Intermediate | 162 | 98.15% | 1.85% |
| Temperate Japonica | 310 | 100.00% | 0.00% |
| Tropical Japonica | 80 | 100.00% | 0.00% |
| Japonica Intermediate | 55 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 97.22% | 2.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0102328091 | A->G | INTERGENIC | None |