Detailed information of SNP:
|
SNP ID:
sf0102385398(Gbrowse)
Chromosome: chr01 Position: 2385398 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 89.78% | 10.22% |
| All Indica | 799 | 94.99% | 5.01% |
| All Japonica | 497 | 81.69% | 18.31% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 32.98% | 67.02% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0102385398 | C->T | LOC_Os01g05090(LOC_Os01g05090.1) | UTR_5_PRIME |