Detailed information of SNP:
|
SNP ID:
sf0102387565(Gbrowse)
Chromosome: chr01 Position: 2387565 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 93.80% | 6.20% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 497 | 82.90% | 17.10% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 38.30% | 61.70% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0102387565 | G->T | LOC_Os01g05090(LOC_Os01g05090.1) | UTR_3_PRIME |
| sf0102387565 | G->T | LOC_Os01g05100(LOC_Os01g05100.1) | UTR_3_PRIME |