Detailed information of SNP:
|
SNP ID:
sf0102399224(Gbrowse)
Chromosome: chr01 Position: 2399224 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 78.90% | 21.10% |
| All Indica | 786 | 70.87% | 29.13% |
| All Japonica | 494 | 88.06% | 11.94% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 364 | 45.88% | 54.12% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 210 | 89.05% | 10.95% |
| Temperate Japonica | 335 | 94.93% | 5.07% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 65 | 67.69% | 32.31% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0102399224 | C->T | INTERGENIC | None |