Detailed information of SNP:



SNP ID: sf0102399224(Gbrowse)

Chromosome: chr01

Position: 2399224
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1403 78.90% 21.10%
All Indica786 70.87% 29.13%
All Japonica494 88.06% 11.94%
Aus67 98.51% 1.49%
Indica I364 45.88% 54.12%
Indica II212 95.75% 4.25%
Indica Intermediate210 89.05% 10.95%
Temperate Japonica335 94.93% 5.07%
Tropical Japonica94 77.66% 22.34%
Japonica Intermediate65 67.69% 32.31%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 83.33% 16.67%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0102399224 C->T INTERGENIC None