Detailed information of SNP:
|
SNP ID:
sf0102401484(Gbrowse)
Chromosome: chr01 Position: 2401484 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 73.91% | 26.09% |
| All Indica | 798 | 62.78% | 37.22% |
| All Japonica | 497 | 88.73% | 11.27% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 38.93% | 61.07% |
| Indica II | 212 | 90.09% | 9.91% |
| Indica Intermediate | 211 | 77.73% | 22.27% |
| Temperate Japonica | 335 | 95.82% | 4.18% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0102401484 | T->A | LOC_Os01g05120(LOC_Os01g05120.1) | INTRON |