Detailed information of SNP:
|
SNP ID:
sf0102409486(Gbrowse)
Chromosome: chr01 Position: 2409486 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 94.90% | 5.10% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 491 | 85.95% | 14.05% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 97.60% | 2.40% |
| Tropical Japonica | 90 | 48.89% | 51.11% |
| Japonica Intermediate | 67 | 77.61% | 22.39% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0102409486 | G->A | INTERGENIC | None |