Detailed information of SNP:
|
SNP ID:
sf0102415437(Gbrowse)
Chromosome: chr01 Position: 2415437 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1405 | 88.11% | 11.89% |
| All Indica | 797 | 94.98% | 5.02% |
| All Japonica | 488 | 78.48% | 21.52% |
| Aus | 65 | 83.08% | 16.92% |
| Indica I | 374 | 95.45% | 4.55% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 332 | 94.28% | 5.72% |
| Tropical Japonica | 93 | 31.18% | 68.82% |
| Japonica Intermediate | 63 | 65.08% | 34.92% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0102415437 | T->C | INTERGENIC | None |