Detailed information of SNP:
|
SNP ID:
sf0102429888(Gbrowse)
Chromosome: chr01 Position: 2429888 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 62.18% | 37.82% |
| All Indica | 796 | 72.99% | 27.01% |
| All Japonica | 494 | 51.62% | 48.38% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 373 | 53.35% | 46.65% |
| Indica II | 212 | 92.92% | 7.08% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 332 | 43.98% | 56.02% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 68 | 54.41% | 45.59% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0102429888 | A->T | INTERGENIC | None |