Detailed information of SNP:



SNP ID: sf0102458995(Gbrowse)

Chromosome: chr01

Position: 2458995
Major allele: A

Minor allele: C

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of C(minor allele)
All1356 54.94% 45.06%
All Indica752 31.12% 68.88%
All Japonica492 84.55% 15.45%
Aus60 90.00% 10.00%
Indica I363 19.56% 80.44%
Indica II191 42.41% 57.59%
Indica Intermediate198 41.41% 58.59%
Temperate Japonica332 90.66% 9.34%
Tropical Japonica93 75.27% 24.73%
Japonica Intermediate67 67.16% 32.84%
Group VI/Aromatic14 100.00% 0.00%
Intermediate38 71.05% 28.95%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0102458995 A->C INTERGENIC None