Detailed information of SNP:
|
SNP ID:
sf0102475510(Gbrowse)
Chromosome: chr01 Position: 2475510 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 87.84% | 12.16% |
| All Indica | 796 | 97.24% | 2.76% |
| All Japonica | 496 | 74.60% | 25.40% |
| Aus | 66 | 78.79% | 21.21% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 210 | 95.24% | 4.76% |
| Temperate Japonica | 334 | 87.43% | 12.57% |
| Tropical Japonica | 94 | 35.11% | 64.89% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0102475510 | C->T | INTERGENIC | None |