Detailed information of SNP:
|
SNP ID:
sf0102503990(Gbrowse)
Chromosome: chr01 Position: 2503990 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 92.68% | 7.32% |
| All Indica | 791 | 88.62% | 11.38% |
| All Japonica | 494 | 98.99% | 1.01% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 374 | 89.57% | 10.43% |
| Indica II | 209 | 89.00% | 11.00% |
| Indica Intermediate | 208 | 86.54% | 13.46% |
| Temperate Japonica | 333 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0102503990 | C->T | LOC_Os01g05320(LOC_Os01g05320.1) | INTRON |