Detailed information of SNP:
|
SNP ID:
sf0102530005(Gbrowse)
Chromosome: chr01 Position: 2530005 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1385 | 83.18% | 16.82% |
| All Indica | 773 | 75.29% | 24.71% |
| All Japonica | 491 | 94.91% | 5.09% |
| Aus | 66 | 80.30% | 19.70% |
| Indica I | 361 | 72.58% | 27.42% |
| Indica II | 207 | 87.44% | 12.56% |
| Indica Intermediate | 205 | 67.80% | 32.20% |
| Temperate Japonica | 332 | 95.18% | 4.82% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 65 | 90.77% | 9.23% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0102530005 | T->C | LOC_Os01g05350(LOC_Os01g05350.1) | Non-Synonymous SNP |