Detailed information of SNP:
|
SNP ID:
sf0102530039(Gbrowse)
Chromosome: chr01 Position: 2530039 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1391 | 74.48% | 25.52% |
| All Indica | 777 | 61.00% | 39.00% |
| All Japonica | 493 | 93.91% | 6.09% |
| Aus | 66 | 77.27% | 22.73% |
| Indica I | 361 | 57.62% | 42.38% |
| Indica II | 208 | 70.67% | 29.33% |
| Indica Intermediate | 208 | 57.21% | 42.79% |
| Temperate Japonica | 332 | 94.28% | 5.72% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 67 | 91.04% | 8.96% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0102530039 | C->A | LOC_Os01g05350(LOC_Os01g05350.1) | Synonymous |