Detailed information of SNP:
|
SNP ID:
sf0102538858(Gbrowse)
Chromosome: chr01 Position: 2538858 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1367 | 51.79% | 48.21% |
| All Indica | 761 | 25.36% | 74.64% |
| All Japonica | 490 | 87.76% | 12.24% |
| Aus | 61 | 68.85% | 31.15% |
| Indica I | 342 | 16.67% | 83.33% |
| Indica II | 213 | 37.56% | 62.44% |
| Indica Intermediate | 206 | 27.18% | 72.82% |
| Temperate Japonica | 332 | 88.86% | 11.14% |
| Tropical Japonica | 93 | 87.10% | 12.90% |
| Japonica Intermediate | 65 | 83.08% | 16.92% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0102538858 | G->A | LOC_Os01g05370(LOC_Os01g05370.1) | INTRON |